Click on publication title for project webpage and datasets

Topic	Publication	PubMed	Full Text
Ovarian Cancer	Patterns of Gene Expression That Characterize Long-Term Survival in Advanced Stage Serous Ovarian Cancers Andrew Berchuck, Edwin S. Iversen, Johnathan M. Lancaster, Jennifer Pittman, Jinggin Luo, Paula Lee, Susan Murphy, Holly Dressman, Mike West, Joseph R Nevins and Jeffrey R. Marks
Ovarian Cancer	Gene expression patterns that characterize advanced stage serous ovarian cancers Lancaster, J., Dressman, H., Whitaker, R., Havrilesky, L., Gray, J., Marks, J., Nevins, J., and Berchuck, A. J Soc Gynecol Investig. 2004 Jan;11(1):51-9.
Breast Cancer	Gene expression predictors of breast cancer outcomes Huang, E., Cheng, S.-H., Dressman, H., Pittman, J., Tsou, M.-H., Horng, Ch.-F., Bild, A., Iversen, E. S., Liao, M., Chen, C.-M., West, M., Nevins, J. R., and Huang, A. T. Lancet (2003) 361, 1590-1596.
Oncogenic Pathways	Distinct gene expression phenotypes of cells lacking Rb and Rb family members. Black, E. P., Huang, E., Dressman, H., Rempel, R., Laakso, N., Asa, S., Ishida, S., West, M., and Nevins, J. R. Cancer Research 63:3716-3723 (2003).
Oncogenic Pathways	Gene expression phenotypic models that predict the activity of oncogenic pathways. Huang, E., Ishida, I., Pittman, J., Dressman, H., Bild, A., Kloos, M., D'Amico, M., Pestell, R.G., West, M. and Nevins. J.R. Nature Genetics, 34:226-230.
Cardiovascular Function	Differential gene expression and genomic patient stratification following left ventricular assist device support. Blaxall, B.C., Tschannen-Moran, B.M., Milano, C.A., and Koch, W.J. (2003) J Am Coll Cardiology 41, (7) 1096-1106.
Development	A framework for integrating the songbird brain. Jarvis, E.D., et al. (2002). J Comp. Physiol. 188, 961-980.
Breast Cancer	Predicting the clinical status of human breast cancer by using gene expression profiles West, M., Blanchette, C., Dressman, H., Huang, E., Ishida, S., Spang, R., Zuzan, H., Marks, J. R., and Nevins, J. R. (2001). Proc. Nat’l. Acad. Sci. USA 98, 11462-11467.
E2F/Cell Cycle	Role for E2F in the control of both DNA replication and mitotic functions as revealed from DNA microarray analysis. Ishida, S., Huang, E., Zuzan, H., Spang, R., Leone, G., West, M., and Nevins, J. R. (2001). Mol. Cell. Biol. 21, 4684-4699.
TOR Signaling	The TOR signaling cascade regulates gene expression in response to nutrients. Cardenas ME, Cutler NS, Lorenz MC, Di Como CJ, and Heitman J. (1999). Genes & Dev. 13, 3271-3279.

Other Publications

Publication	PubMed	Full Text
Towards integrated clinico-genomic models for personalized medicine: combining gene expression signatures and clinical factors in breast cancer outcomes prediction. Nevins, J. R., Huang, E.S., Dressman, H., Pittman, J., Huang, A.T., and West, M.(2003). Hum. Mol. Genet. 12, R153-157.
Gene Expression phenotypes of oncogenic signaling pathways. , Huang, E.S., Black, E.P., Dressman, H., West, M., and Nevins, J. R. (2003). Cell Cycle 2, 415-417.
Using gene expression analysis to predict the clinical outcome of breast cancer. Huang, E., West, M., and Nevins, J. R. (2003). Recent Prog. Horm. Res. 58, 55-73.
Towards a genomic-based diagnosis. Brugarolas, J., Haynes, B. F., and Nevins, J. R. (2001). Lancet 357, 249-250.
Prediction and uncertainty in the analysis of gene expression profiles. Spang, R., Blanchette, C., Zuzan, H., Marks, J. R., Nevins, J. R., and West, M. In Silico Biol. 2, 0033.